PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001559m
Common NameCARUB_v10001559mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 305aa    MW: 34131.3 Da    PI: 6.4529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001559mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53.2e-24104166259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT..EEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk..vveitYegeHnhe 59 
                      +Dg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+r +e+++  ++e+ Y+g H ++
  Carubv10001559m 104 EDGFSWRKYGQKDILGARFPRGYYRCTYRksqGCEATKHVQRYDENQNqmLFEVSYRGIHSCS 166
                      8***************************98889*********8765432279********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-23101167IPR003657WRKY domain
PROSITE profilePS5081119.302103166IPR003657WRKY domain
SuperFamilySSF1182903.27E-21103167IPR003657WRKY domain
SMARTSM007742.4E-34103167IPR003657WRKY domain
PfamPF031068.9E-24104165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKKEINELMT QGRDYAHQFG SASSQETREH LANKILESYH KSLTIMNYSG DQDSPHAQGG  60
GGGSPKSDDS DQEPLVIKKS KKSMPKWTRK VIIAPGVGID RSLEDGFSWR KYGQKDILGA  120
RFPRGYYRCT YRKSQGCEAT KHVQRYDENQ NQMLFEVSYR GIHSCSQAAN VGSTVPVQNL  180
EPNQTENQEN LDDIVKGSLE SYNHDQEHFH HTLHYPLSST PTLEGNNAYM LQPRDHNMEF  240
FGSTSFSNDL GTNINYNFPA SGSASHSTSN SPSTIPLESP FESYDPNHPY DPNHPYGGFG  300
GFYS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288314.10.0hypothetical protein CARUB_v10001559mg
SwissprotQ9FL621e-166WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLR0FG170.0R0FG17_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__2402__AT5G24110.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-164WRKY DNA-binding protein 30